Sounds like you could possibly have a vacuum leak on those 2 runners, especially if it went from one engine to the other with the same manifold. If you have it bad enough to have 2 cylinders not firing it has to have an extremely rough idle. But there could be a bunch of reasons for a miss at idle, just throwing the vacuum leak out there as you said the symptom is the same on different engines.
Oil fill cap should be on the left side of motor and I believe there is a rubber plug in the right cover. Going from memory of working at a Pontiac dealership on the grease rack back in 1969, hope my memory is still good on that point. If I'm not right someone should be along shortly to correct me.
If your using 389 covers on 400 heads do you have spacers so they'll clear the rocker arms. Although they bolt on as soon as you start it you'll have 16 dimples in the stock covers. Had to find that one out the hard way and ruined a set of good chrome covers back in 1970.
A member here on PY goes by Suntuned is quite good at setting up older distributors. He may have the correct advance cans for yours and if you want it right he does mail order recurve and rebuilding. Your bushings or cam in the distributor may be worn out too.
__________________
Brad Yost
1973 T/A (SOLD)
2005 GTO
1984 Grand Prix
100% Pontiacs in my driveway!!! What's in your driveway?
If you don't take some of the RACETRACK home with you, Ya got cheated
 
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